LOGISTAR
Pytorch model to predict a score from a DNA sequence (wilson)
data: 2023-10-09

Build a Pytorch model to predict a score from a DNA sequence

Generate synthetic DNA data
Prepare data for Pytorch training
Define Pytorch models
Define training loop functions
Run the models
Check model predictions on test set
Visualize convolutional filters
Conclusion

 

 

https://github.com/erinhwilson/dna-pytorch-tutorial/blob/main/basic_DNA_tutorial.ipynb